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SS-31 vs MOTS-c

SS-31, also known as elamipretide, and MOTS-c are both peptides studied in mitochondrial and longevity research, but they are described as acting in different ways. SS-31 is researched for concentrating in the inner mitochondrial membrane and interacting with cardiolipin, a phospholipid that shapes membrane structure. Studies have examined its effects on electron-transport efficiency and oxidative stress. MOTS-c is a peptide encoded in mitochondrial DNA and is studied as a signal that translocates to the nucleus under metabolic stress, with research focused on AMPK-associated pathways. SS-31 has been evaluated in a phase 3 trial in primary mitochondrial myopathy and in heart failure research. MOTS-c research, mainly in animal and cell models, has examined obesity, insulin resistance, bone metabolism and islet cell senescence.

Key differences

  1. 01

    SS-31 is studied for binding cardiolipin within the inner mitochondrial membrane, whereas MOTS-c is studied as a mitochondrial-DNA-encoded signal that moves to the nucleus and influences genes tied to metabolic homeostasis.

  2. 02

    SS-31 research centers on electron-transport efficiency and oxidative stress, while MOTS-c research centers on AMPK-associated pathways governing how cells manage energy availability and stress.

  3. 03

    SS-31 has been evaluated in the MMPOWER-3 phase 3 randomized trial in primary mitochondrial myopathy, and a 2026 review reports its first regulatory approval, whereas MOTS-c research consists mainly of animal and cell studies with no late-stage trials or approvals described.

  4. 04

    SS-31 has been studied in heart failure, cardiomyocyte injury and neuroinflammation models, while MOTS-c has been studied in obesity, insulin resistance, gestational diabetes, bone metabolism and lung ischemia-reperfusion models.

  5. 05

    Safety was an evaluated endpoint in a phase 3 trial of SS-31, whereas human safety data for MOTS-c are limited and its long-term effects in humans have not been characterized.

Side by side

What it is
SS-31

Inner mitochondrial membrane, oxidative stress

MOTS-c

Mitochondrial activation, metabolic flexibility

Research status
SS-31

Approved analog

MOTS-c

Preclinical

Category
SS-31

Longevity

MOTS-c

Longevity

Half-life
SS-31Not documented
MOTS-cNot documented
Routes
SS-31

Subcutaneous

MOTS-c

Subcutaneous

Studied range
SS-31

Research protocols have used 1–10 mg per administration, 3 times per week (morning), in 8-week blocks with 4 weeks off.

MOTS-c

Research protocols have used 500–5,000 mcg per administration, 3 times per week (morning, fasted), in 8-week blocks with 4 weeks off.

Studied for
SS-31
  • Cardiolipin binding in the inner mitochondrial membrane
  • Electron-transport efficiency and oxidative stress
  • Primary mitochondrial myopathy in a phase 3 clinical trial
  • Mitochondrial dysfunction in heart failure research
  • Synaptic and memory impairment in mouse models of inflammation
  • Cardiomyocyte hypoxia/reoxygenation injury in cell models
MOTS-c
  • Metabolic homeostasis, obesity and insulin resistance in animal models
  • Hyperglycemia and insulin resistance in gestational diabetes research
  • Pancreatic islet cell senescence and diabetes onset
  • Bone metabolism regulation
  • Lung ischemia-reperfusion injury and antioxidant gene activation
  • Ovarian cancer progression in laboratory studies
Reported effects
SS-31
  • Safety was an evaluated endpoint in the MMPOWER-3 phase 3 trial in primary mitochondrial myopathy
  • Specific adverse events are not summarized in the cited study titles
  • Much of the mechanistic evidence comes from animal and cell studies
MOTS-c
  • Human safety data are limited
  • Adverse events are not summarized in the cited studies
  • Long-term effects in humans have not been characterized
Cited studies
SS-31

5 cited studies

MOTS-c

5 cited studies

Studied ranges describe what published research protocols have used. They are not instructions or recommendations. Products are sold for research purposes only; each order ships with a protocol guide for the specific product.

Mechanism

How it works

SS-31

Research describes SS-31 as concentrating in the inner mitochondrial membrane and interacting with cardiolipin, studied for effects on electron-transport efficiency and oxidative stress.

  • Cardiolipin Affinity

    Studied for selective binding to a phospholipid that shapes the structure of the inner mitochondrial membrane.

  • Redox Balance

    Explored for effects on electron-transport efficiency and the oxidative by-products of energy production.

How it works

MOTS-c

Research describes MOTS-c as translocating to the nucleus under metabolic stress, where it is studied for effects on genes governing metabolic homeostasis, largely via AMPK-associated pathways.

  • Mitochondrial Origin

    Encoded within mitochondrial DNA and studied as a signal between the mitochondria and the rest of the cell.

  • Metabolic Response

    Explored in research on AMPK-associated pathways governing how cells manage energy availability and stress.

All comparisonsScience library